0.0
without_OMAT_gene
<html><body><title>AT3G28415.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u322841501000i/AT3G28415.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u322841501000i/AT3G28415.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u322841501000i/AT3G28415.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321159101000i">AT3G11591.1</a></td><td>0.933571</td><td>unknown protein</td><td>-</td><td>-</td><td>OMAT3P004070</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420487001000i">AT4G04870.1</a></td><td>0.913313</td><td>CLS (CARDIOLIPIN SYNTHASE)</td><td>OMAT4P101340,OMAT4P101350</td><td>[OMAT4P101340]-, [OMAT4P101350]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120390501000i">AT1G03905.1</a></td><td>0.909087</td><td>ABC transporter family protein</td><td>OMAT1P001190</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526516501000i">AT5G65165.1</a></td><td>0.906691</td><td>SDH2-3</td><td>OMAT5P117840</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224431001000i">AT2G44310.1</a></td><td>0.905422</td><td>calcium-binding EF hand family protein</td><td>OMAT2P012280</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221932001000i">AT2G19320.1</a></td><td>0.904056</td><td>unknown protein</td><td>OMAT2P102800</td><td>-</td><td>OMAT2P003190</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120515001000i">AT1G05150.1</a></td><td>0.90298</td><td>calcium-binding EF hand family protein</td><td>OMAT1P101370</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525328001000i">AT5G53280.1</a></td><td>0.902775</td><td>PDV1 (PLASTID DIVISION1)</td><td>OMAT5P015560</td><td>-</td><td>OMAT5P113760</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525726001000i">AT5G57260.1</a></td><td>0.902502</td><td>CYP71B10</td><td>OMAT5P114970</td><td>-</td><td>OMAT5P017130</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421892001000i">AT4G18920.1</a></td><td>0.900466</td><td>unknown protein</td><td>OMAT4P005785</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420212001000i">AT4G02120.1</a></td><td>-0.857969</td><td>CTP synthase, putative / UTP--ammonia ligase, putative</td><td>OMAT4P000780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523485001000i">AT5G34850.1</a></td><td>-0.842186</td><td>PAP26 (PURPLE ACID PHOSPHATASE 26)</td><td>OMAT5P108500,OMAT5P108510</td><td>[OMAT5P108500]-, [OMAT5P108510]-</td><td>OMAT5P009655,OMAT5P009660</td><td>[OMAT5P009655]-, [OMAT5P009660]-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126719001000i">AT1G67190.1</a></td><td>-0.838656</td><td>F-box family protein</td><td>OMAT1P018730</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127186001000i">AT1G71860.1</a></td><td>-0.825127</td><td>PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)</td><td>OMAT1P020610</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321229001000i">AT3G12290.1</a></td><td>-0.824241</td><td>tetrahydrofolate dehydrogenase/cyclohydrolase, putative</td><td>OMAT3P004300</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520853001000i">AT5G08530.1</a></td><td>-0.823926</td><td>CI51 (51 kDa subunit of complex I)</td><td>OMAT5P102370</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522203002000i">AT5G22030.2</a></td><td>-0.820847</td><td>UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8)</td><td>OMAT5P106390</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127943002000i">AT1G79430.2</a></td><td>-0.819016</td><td>APL (ALTERED PHLOEM DEVELOPMENT)</td><td>OMAT1P120960</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122026001000i">AT1G20260.1</a></td><td>-0.817963</td><td>hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism</td><td>OMAT1P007430</td><td>-</td><td>OMAT1P106550</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223908001000i">AT2G39080.1</a></td><td>-0.814509</td><td>binding / catalytic</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u322841501000i/AT3G28415.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>12/200</td><td>4.40</td><td>4.13e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>12/200</td><td>4.20</td><td>6.88e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>16/200</td><td>2.70</td><td>1.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>14/200</td><td>2.87</td><td>1.28e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0022414</td><td>reproductive process</td><td>15/200</td><td>2.49</td><td>3.97e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>14/200</td><td>2.54</td><td>4.65e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>16/200</td><td>1.90</td><td>4.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>82/200</td><td>1.68</td><td>6.75e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>41/200</td><td>2.12</td><td>1.19e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>78/200</td><td>1.54</td><td>6.23e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>85/200</td><td>1.42</td><td>5.51e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>30/200</td><td>2.06</td><td>5.58e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>30/200</td><td>2.04</td><td>6.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>30/200</td><td>1.98</td><td>1.07e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>27/200</td><td>2.05</td><td>1.27e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>16/200</td><td>2.29</td><td>6.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>bilateral</td><td>-</td><td>10/200</td><td>2.74</td><td>1.20e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>14/200</td><td>2.02</td><td>4.43e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT3G28415.1